Survival Machine
Data to Sound
The last step in preparing the data for the algorithm
was to "fold" it into lists, mimicking the folding that occurs naturally
in protein molecules. The three "stop" codons (# 11, 12, & 15)
were used to separate the large list of data into smaller units. Each stop codon
was placed at the beginning of the following list, creating four types: three
that begin with a stop codon (11, 12, 15) and one that does not (i.e. the first
list in each exon). The data for neuroligin 4 Y-linked now looks like this
exon 1
• 63 46 47 31 60 63 36 59 17 31 22 20 22 21 22 34 54 46 50 64 58 38
27 22 62 18 59 62 50 16 17 55 29 32 47 24 64 30 60 16 20 64 63 48 63 57 52
54 34 64 29 31 45 46 36 64 13 64 50 8 4 64 42 44 52 10 52 6 56 29 24 17 26
21 24 52 56 50 21 8 29 32 1 6 48 48 30 37 7 22 48 55 34 21 37 17 31 62 53
6 16 46 22 1 18 22 17 54 6 31 18 55 29 50 17 14 22 21 60 59 30;
exon 2
• 49 58 13 63 1 14 43 55 9 2 5 8 48 21 54 2 63 17 4 21 17 60 54 38 10
17 44 31 17 32 45 16 45 31 33;
• 12 38 45 13 20 22 31 60 29 25 16 21 18 13 13 5 38 2 53 4 53 45 9 39
6 35 49 17 29 16 41 34 50 17 54 37 47 5 38 21 33 55 40 27 58 31 3 26 49 53
39 42 35 3 52 43 37 31 56 25 44 42 26 9 22 36 63 37 13 52 26 61 63 31 7 9
64 53 22 3 54 10 22 26 34 60 63 48 32 1 31 26 26 59 6 26 6 6 16 34 56 37 28
35 50 34 31 1 2 50 61 8 22 31 23 29 51 59 44 5 9 13 19 55 45 29 22 37 16 1
38 38 36 13 51 34 13 45 38 3 49 27 51 27 35 59 55 8 17 7 9 39 37 3 61 22 45
59 51;
exon 3
• 41 5 45 39 39 36 47 47 18 49 45 53 3 37 19 64 60 2 7 45 63 60 38 52
39 45 33 51 56 40 33 13 54 40 3 64 39 53 37 49 37 38 33 39 7 20 29 60 41 25;
exon 4
• 52 1;
• 11 57 30 61 38 48 31 27 47 58 34 64 21 29 51 31 33 27 58 29 48 16
33 63 63 35 53 60 54 1 56 64 55 22 47 44 61 34 37 1 56 14 64 50 64 54 6 4
53 40 29 13 38 29 6 23 7 10 59;
exon 5
• 53 2 6 44 48 26 10 5 44 62 58 54 29 6 40 16 58 61 39 7 31 30 54 47
7 34 32 41 13 58 55 47 53 56 8 39 45 29 55 38 46 55 45 57 59 4 29 47 39 47
39 7 47 63 21 37 31 31 38 37 38 30 54 38 7 23 41 54 1 64 30 61 37 55 56 55
53 37 26 55 55 22 31 37 29 45 63 27 56 63 5 21 39 7 55 37 45 29 56 53 39 27
64 59 56 29 47 5 61 55 56 37 61 51 39 63 55 52 61 46 22 39 55 1 55 5 6 61
6 39 5 61 55 39 17 7 56 7 18 59 64 43 55 34 13 32 63 34 37 47 5 45 7 42 55
16 54 51 47 59 39 30 63 46 32 32 43 38 29 61 50 21 1 34 55 19 31 16 61 54
22 54 61 54 38 54 55 29 23 62 31 7 56 6 22 38 7 5 3 54 5 3 19 23 8 27 40 59
45 47 22 40 16 58 51 14 54 19 56 51 59 53 22 3 53 5 56 37 22 45 37 52 22 42
63 21 5 36 4 35 5 6 47 39 55 53 45 21 36 54 61 61 45 38 7 16 46 39 5 54 43
34;
exon 6
• 60 44 21 44 36 1 61 16 18 33 2 22 4 31 49 58 31 45 19 57 63 19 2;
• 15 63 38 33 49 9 59 39 1 51 13 7 45 9 49 5 45 43 13 27 23 44 51 48
6;
• 11 47 16 35 57 1 43 34 4;
• 12 33 44 23 42 23 42 55 42 23 43 59 10 58 63 43 42 43 7 47 6 4 2 57
49 17 54 17;
• 12 41 3 13 60 44 49 50 6 3 5 48 38 29 26 43 47 47 43 50 8 17 16 16
56 3 54 18 16 36 43 7 40 2 61 5 18 40 40 8 32 48 33 16 29 45 47 7 29 21 40
9 50 35 31 33 43 60 44 19 57 4 17 13 1 47 23 25 53 18 3 57 10 57 39 48 1 9
43 37 1 3 53 33 3 48 41 43 19 45 17 53;
• 12 43 3 23 17 13 16 33 3 29 37 38 43;
• 11;
• 11 41 9 44 44 45 64 59 43 60;
• 15 35 33 43 34 50 13 19 48 1 13 64 43 9 60 3 17 23;
• 12 27 55 34 59 16 35 9 5 38 19 1 43 13 49 34 16 60 10 63 33 4 21 6
39 40 13 16 1 2 3 7 10 1 10 60 47 1 57 57 9 27 56 44 48 43 23 36 40 35 52
8 2 41 1 4 17 10 47 33 34 58 9 26 44 39 36 40 27 44 4 13 47 37 45 6 17 40
8 33 61 52 3 2 44 35 26 45 9 35 54 2 34 43 61 64 33 22 19 43 35 4 26 50 38;
• 12 21 1 8 35 39 39 1 51 7;
• 12 37 19 42 21 43 25;
• 15;
• 12 3 37 36 49 16 63;
• 12 18 25 59 43 44 43 29 1 9 59 41 19 43 37 34 6 43 6 4 8 9 4 16 49
43 1 59 40 35 2 25 3 41 35 45;
• 12 35 33 45 37;
• 12 34;
• 15 23 42;
• 12 40 39 33 2 13 25 23 44 52 53 13 59 44 1 19 6 27 5 33 1 19 44 2
41 37 48 27 1 29 27 58 45 3 55 22 38;
• 12 58 38 42 35 48 21 6 45 43 29 27 48 39;
• 12 4 61 58 6 45 29 49 13 2 53 3 35 45 35 10 36 37 4 10 3 5 27 13 2
18 50 40 35 45 8 23 39 45 42 53 13;
• 12 19 17 47 59 47 47 36 6 4;
• 11 45 35 40 1 40 1 7 48 60 9;
• 12 9 43 61 33;
• 15 7 37;
A pdf file with all of this data can be downloaded [here].
